Browsing by Author "Chen, Yi-Ping Phoebe"

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GI-POP: A combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects
(2013-04-10)
Lee, Chi-Ching
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Chen, Yi-Ping Phoebe
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Yao, Tzu-Jung
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Ma, Cheng-Yu
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Lo, Wei-Cheng
Sequencing of microbial genomes is important because of microbial-carrying antibiotic and pathogenetic activities. However, even with the help of new assembling software, finishing a whole genome is a time-consuming task. In most bacteria, pathogenetic or antibiotic genes are carried in genomic islands. Therefore, a quick genomic island (GI) prediction method is useful for ongoing sequencing genomes. In this work, we built a Web server called GI-POP (http://gipop.life.nthu.edu.tw) which integrates a sequence assembling tool, a functional annotation pipeline, and a high-performance GI predicting module, in a support vector machine (SVM)-based method called genomic island genomic profile scanning (GI-GPS). The draft genomes of the ongoing genome projects in contigs or scaffolds can be submitted to our Web server, and it provides the functional annotation and highly probable GI-predicting results. GI-POP is a comprehensive annotation Web server designed for ongoing genome project analysis. Researchers can perform annotation and obtain pre-analytic information include possible GIs, coding/non-coding sequences and functional analysis from their draft genomes. This pre-analytic system can provide useful information for finishing a genome sequencing project. (c) 2012 Elsevier B.V. All rights reserved.
Guest Editorial for the 13th Asia Pacific Bioinformatics Conference
(2015-11-12)
Huang, Hsien-Da
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Chen, Yi-Ping Phoebe
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生物資訊及系統生物研究所
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Institude of Bioinformatics and Systems Biology
Guest Editorial for the 13th Asia Pacific Bioinformatics Conference
(2015-11-01)
Huang, Hsien-Da
;
Chen, Yi-Ping Phoebe
;
生物資訊及系統生物研究所
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Institude of Bioinformatics and Systems Biology
Special Issue: 13th Asia Pacific Bioinformatics Conference, HsinChu, Taiwan, 21-23 January 2015
(2015-08-01)
Huang, Hsien-Da
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Chen, Yi-Ping Phoebe
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生物科技學院
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生物科技學系
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生物資訊及系統生物研究所