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黃鎮剛

黃鎮剛 Hwang, Jenn-Kang

電子郵件／E-mail： jkhwang@cc.nctu.edu.tw

服務單位／Department：生物科技學院 ／ 生物資訊及系統生物研究所

著作期間／Publish Period：1992-09-01 - 2014-06-09

著作統計／Statistics

Article（49）
Others（5）
Plan（27）
Proceedings Paper（3）
Thesis（42）

Article

序號
No.		 標題
Title		 著作日期
Date
1 CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation
 2014-06-09
2 A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility
 2014-04-09
3 Site-Specific Structural Constraints on Protein Sequence Evolutionary Divergence: Local Packing Density versus Solvent Exposure
 2014-01-01
4 Local Packing Density Is the Main Structural Determinant of the Rate of Protein Sequence Evolution at Site Level
 2014-01-01
5 Functional Investigation of Transmembrane Helix 3 in H+-Translocating Pyrophosphatase
 2013-12-01
6 On the relationship between the sequence conservation and the packing density profiles of the protein complexes
 2013-07-01
7 Computational Analysis of KRAS Mutations: Implications for Different Effects on the KRAS p.G12D and p.G13D Mutations
 2013-02-20
8 pKNOT v.2: the protein KNOT web server
 2012-07-01
9 CPred: a web server for predicting viable circular permutations in proteins
 2012-07-01
10 Evolutionary information hidden in a single protein structure
 2012-06-01
11 Deciphering the Preference and Predicting the Viability of Circular Permutations in Proteins
 2012-02-16
12 Computational analysis of a novel mutation in ETFDH gene highlights its long-range effects on the FAD-binding motif
 2011-10-21
13 Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution
 2011-01-11
14 Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques
 2010-10-14
15 (PS)(2)-v2: template-based protein structure prediction server
 2009-10-31
16 Prediction of NMR order parameters in proteins using weighted protein contact-number model
 2008-10-01
17 Deriving protein dynamical properties from weighted protein contact number
 2008-08-15
18 On the relationship between the protein structure and protein dynamics
 2008-08-01
19 Soft energy function and generic evolutionary method for discriminating native from nonnative protein conformations
 2008-07-15
20 Predicting RNA-binding sites of proteins using support vector machines and evolutionary information
 2008-01-01
21 Protein subcellular localization prediction based on compartment-specific features and structure conservation
 2007-09-08
22 A simple way to compute protein dynamics without a mechanical model
 2007-07-01
23 pKNOT: the protein KNOT web server
 2007-07-01
24 KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns
 2007-07-01
25 Predicting disulfide connectivity patterns
 2007-05-01
26 Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad
 2007-04-20
27 Proportion of solvent-exposed amino acids in a protein and rate of protein evolution
 2007-04-01
28 Protein complexity, gene duplicability and gene dispensability in the yeast genome
 2007-01-31
29 Structural transformations in dinuclear zinc complexes involving Zn-Zn bonds
 2007-01-01
30 A three-coordinate and quadruply bonded Mo-Mo complex
 2006-11-01
31 Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes
 2006-09-26
32 Prediction of protein subcellular localization
 2006-08-15
33 (PS)(2): protein structure prediction server
 2006-07-01
34 Structure-stability-activity relationship in covalently cross-linked N-carbamoyl D-amino acid amidohydrolase and N-acylamino acid racemase
 2006-06-09
35 The fragment transformation method to detect the protein structural motifs
 2006-05-15
36 Prediction of disulfide connectivity from protein sequences
 2005-11-15
37 Computation of conformational entropy from protein sequences using the machine-learning method - Application to the study of the relationship between structural conservation and local structural stability
 2005-06-01
38 Reassessment of morphological characteristics in freshwater eels (genus Anguilla, Anguillidae) shows congruence with molecular phylogeny estimates
 2005-05-01
39 Amino acid coupling patterns in thermophilic proteins
 2005-04-01
40 Relationship between local structural entropy and protein thermostability
 2004-12-01
41 Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences
 2004-06-01
42 Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
 2004-05-01
43 Numerical performance and throughput benchmark for electronic structure calculations in PC-Linux systems with new architectures, updated compilers, and libraries
 2004-03-01
44 Computing motif correlations in proteins
 2003-12-01
45 Relationship between protein structures and disulfide bonding patterns
 2003-10-01
46 Computation of the protein structure entropy and its applications to protein folding processes 2003-06-01
47 Fine-grained protein fold assignment by support vector machines using generalized npeptide coding schemes and jury voting from multiple-parameter sets
 2003-03-01
48 GEM: A Gaussian evolutionary method for predicting protein side-chain conformations
 2002-08-01
49 A DATA DRIVEN HYBRID COMPUTER ARCHITECTURE 1992-09-01

Others

序號
No.		 標題
Title		 著作日期
Date
1 On the Relationship Between Catalytic Residues and their Protein Contact Number 2011-09-01
2 The C-Terminus of a Subunit Determines The Catalytic Activity of AMP-activated Protein Kinase
 2010-04-01
3 Syntheses and structures of low-coordinate and multiply-bonded M-M complexes 2007-03-25
4 Updated numerical performance and throughput benchmark for electronic structure calculations in PC-LINUX systems. 2004-03-28
5 Special section on bioinformatics - Foreword 2003-11-01

Plan

序號
No.		 標題
Title		 著作日期
Date
1 蛋白質幾何結構為其功能與動態基礎原則之研究(V) 2014
2 蛋白質幾何結構為其功能與動態基礎原則之研究(IV) 2013
3 蛋白質幾何結構為其功能與動態基礎原則之研究( III ) 2012
4 蛋白質幾何結構為其功能與動態基礎原則之研究( II ) 2011
5 蛋白質幾何結構為其功能與動態基礎原則之研究(I) 2010
6 蛋白質結構-動力學-功能之關係( II ) 2009
7 基因體醫學及生技研發之生物資訊核心設施-(子計畫四)結構生物資訊(II) 2009
8 利用物理及蛋白質廓形為基礎的混合方法預測蛋白質結構 2008
9 基因體醫學及生技研發之生物資訊核心設施-(子計畫四)---結構生物資訊(I) 2008
10 蛋白質結構-動力學-功能之關係(I) 2008
11 利用物理及蛋白質廓形為基礎的混合方法預測蛋白質結構 2007
12 基因體醫學及生技研發之生物資訊核心設施---結構生物資訊(III)(子計畫四) 2007
13 基因體醫學及生技研發之生物資訊核心設施---結構生物資訊(II)(子計畫四) 2006
14 利用物理及蛋白質廓形為基礎的混合方法預測蛋白質結構 2006
15 蛋白質序列結構關係分析(III) 2005
16 基因體醫學及生技研發之生物資訊核心設施---結構生物資訊(子計畫四)(I) 2005
17 蛋白質序列結構關係分析(II) 2004
18 核心設施---生物資訊服務核心設施---子計畫十：結構生物資訊核心(II) 2004
19 蛋白質序列結構關係分析 2003
20 核心設施---生物資訊服務核心設施---結構生物資訊核心設施 (I)---子計畫十
 2003
21 TBI生物資訊學核心整合計畫---結構生物資訊核心(III)
 2002
22 統計自由能偶合對應法的發展及應用(III)
 2002
23 統計自由能偶合對應法的發展及應用(II)
 2001
24 結構生物資訊－雙硫鍵資料庫之建立與分析工具之發展(II)
 2001
25 統計自由能偶合對應法的發展及應用(I) 2000
26 結構生物資訊---雙硫鍵資料庫之建立與分析工具之發展(I)
 2000
27 統計自由能偶合對應法的發展及應用(I)
 2000

Proceedings Paper

序號
No.		 標題
Title		 著作日期
Date
1 Deriving correlated motions in proteins from X-ray structure refinement by using TLS parameters
 2013-04-10
2 Molecular dynamics simulation of the enhancement of cobra cardiotoxin and E6 protein binding on mixed self-assembled monolayer molecules
 2006-02-28
3 GEMSCORE: A new empirical energy function for protein folding 2005-01-01

Thesis

序號
No.		 標題
Title		 著作日期
Date
1 蛋白質結構、動態與其演化之間的關係 2013
2 發展神經定序法分析果蠅神經網路圖譜 2012
3 利用X-ray晶體結構最佳化所取得的參數來計算蛋白質內原子間的動態關聯性 2012
4 論蛋白質與核酸之作用–結合結構和演化之研究 2012
5 探討C2H2鋅指蛋白質的非典型核定位訊號和其與去氧核醣核酸結合特異性之關係 2012
6 論隱藏在蛋白質結構的動態資訊 2011
7 打結蛋白質的分析 2011
8 蛋白質單一結構所蘊含之演化訊息 2011
9 由蛋白質序列預測可行的環狀結構重組切位 2010
10 遠距離同源蛋白之序列比對在蛋白質功能與三級結構預測之應用 2009
11 由結構推導蛋白質與蛋白質接觸面的動力學特性
 2009
12 分析纖維酵素蛋白質結構了解內切及外切纖維酵素結合位置
 2009
13 蛋白質催化位置之結構特性
 2008
14 利用加權蛋白質接觸數目推導蛋白質動力學特性
 2008
15 計算結構生物學： 在構形亂度和蛋白質動態上的研究
 2008
16 蛋白質細胞定位及核糖核酸結合點之預測
 2008
17 蛋白質的動態關連性
 2007
18 利用蛋白質結構預測蛋白質內的重要功能位置
 2007
19 蛋白質結構與動態之關係
 2007
20 蛋白質序列-結構-動力學之相關性 2007
21 蛋白質熱穩定性預測與分析
 2007
22 利用蛋白質序列預測雙硫鍵鍵結情形
 2007
23 蛋白質於細胞位置之預測
 2006
24 利用支援向量機器預測特定位置突變所引起的蛋白質穩定性改變
 2006
25 利用彈性網路分子動力學研究蛋白質動態
 2006
26 綜合分析蛋白質的打結
 2006
27 酵母菌基因體的演化分析研究
 2005
28 contributions of residue pairing to beta-sheet fomration: correlated mutation of amino acid residue pairs on antiparallel beta-strands 2005
29 蛋白質摺疊率的研究
 2005
30 搜尋蛋白質中相關聯殘基所構成的網絡
 2005
31 酵素分類的預測
 2005
32 Detection of remote homologues by sequence profile-profile comparison
 2004
33 Prediction of Protein-Protein Interaction Sites from Three-Dimensional Structure
 2004
34 蛋白質結構摺疊新能量函式的最佳化
 2004
35 從蛋白質序列預測殘基相對溶劑可接觸性
 2004
36 利用支持向量機器預測蛋白質中金屬鍵結區域
 2004
37 蛋白質主鏈結構預測
 2004
38 基於支持向量機器方法之蛋白質β-turn預測
 2004
39 藉由序列與結構比對辨認關係較遠的同源序列
 2003
40 藉由同源模擬法預測蛋白質三級結構 2003
41 蛋白質二級結構預測 2002
42 核苷酸酸酶和亞硫酸基轉移酵素之間的結構與序列關係 2001
生物科技學院