Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database

doi:10.1186/gb-2007-8-3-r31

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DC 欄位	值	語言
dc.contributor.author	Tung, Chi-Hua	en_US
dc.contributor.author	Huang, Jhang-Wei	en_US
dc.contributor.author	Yang, Jinn-Moon	en_US
dc.date.accessioned	2014-12-08T15:14:58Z	-
dc.date.available	2014-12-08T15:14:58Z	-
dc.date.issued	2007	en_US
dc.identifier.issn	1474-760X	en_US
dc.identifier.uri	http://hdl.handle.net/11536/11253	-
dc.identifier.uri	http://dx.doi.org/10.1186/gb-2007-8-3-r31	en_US
dc.description.abstract	We present a novel protein structure database search tool, 3D- BLAST, that is useful for analyzing novel structures and can return a ranked list of alignments. This tool has the features of BLAST ( for example, robust statistical basis, and effective and reliable search capabilities) and employs a kappa-alpha (kappa, alpha) plot derived structural alphabet and a new substitution matrix. 3D- BLAST searches more than 12,000 protein structures in 1.2 s and yields good results in zones with low sequence similarity.	en_US
dc.language.iso	en_US	en_US
dc.title	Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database	en_US
dc.type	Article	en_US
dc.identifier.doi	10.1186/gb-2007-8-3-r31	en_US
dc.identifier.journal	GENOME BIOLOGY	en_US
dc.citation.volume	8	en_US
dc.citation.issue	3	en_US
dc.contributor.department	生物科技學系	zh_TW
dc.contributor.department	生物資訊及系統生物研究所	zh_TW
dc.contributor.department	Department of Biological Science and Technology	en_US
dc.contributor.department	Institude of Bioinformatics and Systems Biology	en_US
dc.identifier.wosnumber	WOS:000246081600013	-
dc.citation.woscount	35	-
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