Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database
| dc.citation.issue | 3 | en_US |
| dc.citation.volume | 8 | en_US |
| dc.citation.woscount | 35 | |
| dc.contributor.author | Tung, Chi-Hua | en_US |
| dc.contributor.author | Huang, Jhang-Wei | en_US |
| dc.contributor.author | Yang, Jinn-Moon | en_US |
| dc.contributor.department | 生物科技學系 | zh_TW |
| dc.contributor.department | 生物資訊及系統生物研究所 | zh_TW |
| dc.contributor.department | Department of Biological Science and Technology | en_US |
| dc.contributor.department | Institude of Bioinformatics and Systems Biology | en_US |
| dc.date.accessioned | 2014-12-08T15:14:58Z | |
| dc.date.available | 2014-12-08T15:14:58Z | |
| dc.date.issued | 2007 | en_US |
| dc.description.abstract | We present a novel protein structure database search tool, 3D- BLAST, that is useful for analyzing novel structures and can return a ranked list of alignments. This tool has the features of BLAST ( for example, robust statistical basis, and effective and reliable search capabilities) and employs a kappa-alpha (kappa, alpha) plot derived structural alphabet and a new substitution matrix. 3D- BLAST searches more than 12,000 protein structures in 1.2 s and yields good results in zones with low sequence similarity. | en_US |
| dc.identifier.doi | 10.1186/gb-2007-8-3-r31 | en_US |
| dc.identifier.issn | 1474-760X | en_US |
| dc.identifier.journal | GENOME BIOLOGY | en_US |
| dc.identifier.uri | http://dx.doi.org/10.1186/gb-2007-8-3-r31 | en_US |
| dc.identifier.uri | https://ir.lib.nycu.edu.tw/handle/11536/11253 | |
| dc.identifier.wosnumber | WOS:000246081600013 | |
| dc.language.iso | en_US | en_US |
| dc.title | Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database | en_US |
| dc.type | Article | en_US |