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dc.contributor.authorPersson, Rasmus A. X.en_US
dc.contributor.authorVoulgarakis, Nikolaos K.en_US
dc.contributor.authorChu, Jhih-Weien_US
dc.date.accessioned2015-07-21T11:20:58Z-
dc.date.available2015-07-21T11:20:58Z-
dc.date.issued2014-11-07en_US
dc.identifier.issn0021-9606en_US
dc.identifier.urihttp://dx.doi.org/10.1063/1.4900498en_US
dc.identifier.urihttp://hdl.handle.net/11536/123908-
dc.description.abstractFluctuating hydrodynamics (FHD) is a general framework of mesoscopic modeling and simulation based on conservational laws and constitutive equations of linear and nonlinear responses. However, explicit representation of electrical forces in FHD has yet to appear. In this work, we devised an Ansatz for the dynamics of dipole moment densities that is linked with the Poisson equation of the electrical potential phi in coupling to the other equations of FHD. The resulting phi-FHD equations then serve as a platform for integrating the essential forces, including electrostatics in addition to hydrodynamics, pressure-volume equation of state, surface tension, and solvent-particle interactions that govern the emergent behaviors of molecular systems at an intermediate scale. This unique merit of phi-FHD is illustrated by showing that the water dielectric function and ion hydration free energies in homogeneous and heterogenous systems can be captured accurately via the mesoscopic simulation. Furthermore, we show that the field variables of phi-FHD can be mapped from the trajectory of an all-atom molecular dynamics simulation such that model development and parametrization can be based on the information obtained at a finer-grained scale. With the aforementioned multiscale capabilities and a spatial resolution as high as 5 angstrom, the phi-FHD equations represent a useful semi-explicit solvent model for the modeling and simulation of complex systems, such as biomolecular machines and nanofluidics. (C) 2014 AIP Publishing LLC.en_US
dc.language.isoen_USen_US
dc.titleDynamic mesoscale model of dipolar fluids via fluctuating hydrodynamicsen_US
dc.typeArticleen_US
dc.identifier.doi10.1063/1.4900498en_US
dc.identifier.journalJOURNAL OF CHEMICAL PHYSICSen_US
dc.citation.volume141en_US
dc.citation.issue17en_US
dc.contributor.department生物科技學系zh_TW
dc.contributor.department生物資訊及系統生物研究所zh_TW
dc.contributor.departmentDepartment of Biological Science and Technologyen_US
dc.contributor.departmentInstitude of Bioinformatics and Systems Biologyen_US
dc.identifier.wosnumberWOS:000344782200008en_US
dc.citation.woscount0en_US
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